Research Code
We write open-source code to help researchers (including ourselves!) display bioinformatic data. We're interested in visualizing conservation clusters in protein primary and tertiary structure, and using those clusters to make predictions we can test in the wet lab.
You're welcome to download and use our code. If you do, please cite us using our GitHub page and the relevant publications for the code you use. And, if you feel like it, please let us know! We're always looking for ways to improve our scripts, collaborate, and learn.
Sliding Window Localized Differential enrichment Detection
Input your partitioned MSAs and display local differential enrichments of amino acids of your choice.
Thread-Filter-Calculate
Generate sets of threaded structures, then calculate how residues of your choice cluster near a ligand or chosen position.